PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G044400.1
Common NameB456_007G044400, LOC105802127
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 334aa    MW: 37299.9 Da    PI: 8.0083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G044400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10168215455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.007G044400.1 168 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 215
                         8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.16E-11162219No hitNo description
SuperFamilySSF474592.49E-17162230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-7168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATYSFQSHP FLLDSIFLPN TSTTKVSGLV EEGNIINPNC FPQFYQDSPV GSMLHQSSCL  60
DHSSNEPSTV TKKQSTEDDS STAVDKLESG EQVTQKKRTR NGTTSNSAQF KGAKEGKTKK  120
QKKCNDGLKN EKKGCNSKAD KKDQEKSTEQ PPTGYIHVRA RRGQATDSHS LAERVRREKI  180
SERMKTLQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASLSP TFYDFGVDLE  240
TLMIRPERVS STETSPLPMP CPQQCNPIQT TIAPSHINYP LLDVSTALFL QQGLRPNLFS  300
HSQDNGSVLW DVEDQRQKIF NSSQLNDNLC FFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.33580.0seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489044.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A0D2T8U80.0A0A0D2T8U8_G
STRINGVIT_17s0000g00430.t011e-114(Vitis vinifera)
STRINGPOPTR_0012s10670.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-63bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]